PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco001069.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MIKC_MADS
Protein Properties Length: 294aa    MW: 33676.5 Da    PI: 9.9661
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco001069.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.85.1e-271059251
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev ++ifsstg+lye++s
  Aco001069.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGLMIFSSTGRLYEFAS 59
                 8***********************************************86 PP

2K-box88.11.8e-2976170498
        K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  ++ + +++++ + +q+e+a L+++++nLq+++R+l+Ge+L+ Ls+k+Lq+Le+qLe sl+ +R kK++ll+++i+el +k   + +en++L kk+
  Aco001069.1  76 HQLVMNANSEVKFWQREVASLRQQLHNLQENHRQLMGEELSGLSVKDLQNLENQLEMSLRGVRMKKDQLLIDEIQELNQKGSLIYQENMELYKKV 170
                  4555588999**********************************************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.861161IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-39160IPR002100Transcription factor, MADS-box
CDDcd002657.42E-45277No hitNo description
SuperFamilySSF554552.35E-32291IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.4E-2783170IPR002487Transcription factor, K-box
PROSITE profilePS5129716.00486176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGLMIFSS TGRLYEFAST  60
SMKSVLDRYN KSKEEHQLVM NANSEVKFWQ REVASLRQQL HNLQENHRQL MGEELSGLSV  120
KDLQNLENQL EMSLRGVRMK KDQLLIDEIQ ELNQKGSLIY QENMELYKKV NFIRQENMEL  180
YKKVYETRGA DIVHRAPTIP HNFCIAEDAH VPIHLELSQP QQTDGVQPGA PKLGTIHSNA  240
ADFNYTKEKS MDFFVPTTAG SVFEKARLRQ APQRLGARRG PPRLSNSEAR RYC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-21183183Myocyte-specific enhancer factor 2B
1tqe_Q3e-21183183Myocyte-specific enhancer factor 2B
1tqe_R3e-21183183Myocyte-specific enhancer factor 2B
1tqe_S3e-21183183Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008800745.11e-140PREDICTED: MADS-box transcription factor 23-like
SwissprotQ6EP491e-128MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLM0SCJ81e-132M0SCJ8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P07310_0011e-132(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-105AGAMOUS-like 16